J7_6PC6_001

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PC6|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC6|1|I|C|8
6PC6|1|I|G|9
6PC6|1|I|A|10
6PC6|1|I|C|11
6PC6|1|I|U|12
6PC6|1|I|A|13
6PC6|1|I|A|14
6PC6|1|I|G|15
*
6PC6|1|I|U|525
6PC6|1|I|A|526
6PC6|1|I|C|527
6PC6|1|I|A|528
6PC6|1|I|A|529
6PC6|1|I|G|530
6PC6|1|I|C|531
*
6PC6|1|I|G|2018
6PC6|1|I|A|2019
6PC6|1|I|A|2020
6PC6|1|I|C|2021
6PC6|1|I|U|2022
6PC6|1|I|C|2023
*
6PC6|1|I|G|2040
6PC6|1|I|U|2041
6PC6|1|I|A|2042
6PC6|1|I|C|2043
*
6PC6|1|I|G|2625
6PC6|1|I|C|2626
6PC6|1|I|G|2627
6PC6|1|I|C|2628
6PC6|1|I|U|2629
6PC6|1|I|G|2630
*
6PC6|1|I|C|2788
6PC6|1|I|C|2789
*
6PC6|1|I|G|2894
6PC6|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13