J7_6PC6_002

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6PC6|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC6|1|I|C|817
6PC6|1|I|G|818
6PC6|1|I|A|819
6PC6|1|I|A|820
6PC6|1|I|A|821
6PC6|1|I|G|822
*
6PC6|1|I|C|835
6PC6|1|I|G|836
6PC6|1|I|C|837
6PC6|1|I|C|838
*
6PC6|1|I|G|940
6PC6|1|I|A|941
6PC6|1|I|G|942
6PC6|1|I|A|943
6PC6|1|I|C|944
6PC6|1|I|A|945
6PC6|1|I|C|946
*
6PC6|1|I|G|971
6PC6|1|I|A|972
6PC6|1|I|A|973
6PC6|1|I|G|974
6PC6|1|I|A|975
6PC6|1|I|G|976
*
6PC6|1|I|C|987
6PC6|1|I|A|988
6PC6|1|I|G|989
6PC6|1|I|A|990
6PC6|1|I|C|991
*
6PC6|1|I|G|1163
6PC6|1|I|C|1164
*
6PC6|1|I|G|1185
6PC6|1|I|G|1186
6PC6|1|I|G|1187
6PC6|1|I|U|1188
6PC6|1|I|A|1189
6PC6|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15