J7_6PC7_001

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PC7|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC7|1|I|C|8
6PC7|1|I|G|9
6PC7|1|I|A|10
6PC7|1|I|C|11
6PC7|1|I|U|12
6PC7|1|I|A|13
6PC7|1|I|A|14
6PC7|1|I|G|15
*
6PC7|1|I|U|525
6PC7|1|I|A|526
6PC7|1|I|C|527
6PC7|1|I|A|528
6PC7|1|I|A|529
6PC7|1|I|G|530
6PC7|1|I|C|531
*
6PC7|1|I|G|2018
6PC7|1|I|A|2019
6PC7|1|I|A|2020
6PC7|1|I|C|2021
6PC7|1|I|U|2022
6PC7|1|I|C|2023
*
6PC7|1|I|G|2040
6PC7|1|I|U|2041
6PC7|1|I|A|2042
6PC7|1|I|C|2043
*
6PC7|1|I|G|2625
6PC7|1|I|C|2626
6PC7|1|I|G|2627
6PC7|1|I|C|2628
6PC7|1|I|U|2629
6PC7|1|I|G|2630
*
6PC7|1|I|C|2788
6PC7|1|I|C|2789
*
6PC7|1|I|G|2894
6PC7|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13