J7_6PC8_001

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PC8|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC8|1|I|C|8
6PC8|1|I|G|9
6PC8|1|I|A|10
6PC8|1|I|C|11
6PC8|1|I|U|12
6PC8|1|I|A|13
6PC8|1|I|A|14
6PC8|1|I|G|15
*
6PC8|1|I|U|525
6PC8|1|I|A|526
6PC8|1|I|C|527
6PC8|1|I|A|528
6PC8|1|I|A|529
6PC8|1|I|G|530
6PC8|1|I|C|531
*
6PC8|1|I|G|2018
6PC8|1|I|A|2019
6PC8|1|I|A|2020
6PC8|1|I|C|2021
6PC8|1|I|U|2022
6PC8|1|I|C|2023
*
6PC8|1|I|G|2040
6PC8|1|I|U|2041
6PC8|1|I|A|2042
6PC8|1|I|C|2043
*
6PC8|1|I|G|2625
6PC8|1|I|C|2626
6PC8|1|I|G|2627
6PC8|1|I|C|2628
6PC8|1|I|U|2629
6PC8|1|I|G|2630
*
6PC8|1|I|C|2788
6PC8|1|I|C|2789
*
6PC8|1|I|G|2894
6PC8|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13