J7_6PC8_002

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

33 nucleotides

Bulged bases

6PC8|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC8|1|I|C|817
6PC8|1|I|G|818
6PC8|1|I|A|819
6PC8|1|I|A|820
6PC8|1|I|A|821
6PC8|1|I|G|822
*
6PC8|1|I|C|835
6PC8|1|I|G|836
6PC8|1|I|C|837
*
6PC8|1|I|G|942
6PC8|1|I|A|943
6PC8|1|I|C|944
6PC8|1|I|A|945
6PC8|1|I|C|946
*
6PC8|1|I|G|971
6PC8|1|I|A|972
6PC8|1|I|A|973
6PC8|1|I|G|974
6PC8|1|I|A|975
6PC8|1|I|G|976
*
6PC8|1|I|C|987
6PC8|1|I|A|988
6PC8|1|I|G|989
6PC8|1|I|A|990
6PC8|1|I|C|991
*
6PC8|1|I|G|1163
6PC8|1|I|C|1164
*
6PC8|1|I|G|1185
6PC8|1|I|G|1186
6PC8|1|I|G|1187
6PC8|1|I|U|1188
6PC8|1|I|A|1189
6PC8|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15