J7_6PCH_001

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PCH|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCH|1|I|C|8
6PCH|1|I|G|9
6PCH|1|I|A|10
6PCH|1|I|C|11
6PCH|1|I|U|12
6PCH|1|I|A|13
6PCH|1|I|A|14
6PCH|1|I|G|15
*
6PCH|1|I|U|525
6PCH|1|I|A|526
6PCH|1|I|C|527
6PCH|1|I|A|528
6PCH|1|I|A|529
6PCH|1|I|G|530
6PCH|1|I|C|531
*
6PCH|1|I|G|2018
6PCH|1|I|A|2019
6PCH|1|I|A|2020
6PCH|1|I|C|2021
6PCH|1|I|U|2022
6PCH|1|I|C|2023
*
6PCH|1|I|G|2040
6PCH|1|I|U|2041
6PCH|1|I|A|2042
6PCH|1|I|C|2043
*
6PCH|1|I|G|2625
6PCH|1|I|C|2626
6PCH|1|I|G|2627
6PCH|1|I|C|2628
6PCH|1|I|U|2629
6PCH|1|I|G|2630
*
6PCH|1|I|C|2788
6PCH|1|I|C|2789
*
6PCH|1|I|G|2894
6PCH|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13