J7_6PCQ_001

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PCQ|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|C|8
6PCQ|1|I|G|9
6PCQ|1|I|A|10
6PCQ|1|I|C|11
6PCQ|1|I|U|12
6PCQ|1|I|A|13
6PCQ|1|I|A|14
6PCQ|1|I|G|15
*
6PCQ|1|I|U|525
6PCQ|1|I|A|526
6PCQ|1|I|C|527
6PCQ|1|I|A|528
6PCQ|1|I|A|529
6PCQ|1|I|G|530
6PCQ|1|I|C|531
*
6PCQ|1|I|G|2018
6PCQ|1|I|A|2019
6PCQ|1|I|A|2020
6PCQ|1|I|C|2021
6PCQ|1|I|U|2022
6PCQ|1|I|C|2023
*
6PCQ|1|I|G|2040
6PCQ|1|I|U|2041
6PCQ|1|I|A|2042
6PCQ|1|I|C|2043
*
6PCQ|1|I|G|2625
6PCQ|1|I|C|2626
6PCQ|1|I|G|2627
6PCQ|1|I|C|2628
6PCQ|1|I|U|2629
6PCQ|1|I|G|2630
*
6PCQ|1|I|C|2788
6PCQ|1|I|C|2789
*
6PCQ|1|I|G|2894
6PCQ|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13