J7_6PCQ_002

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6PCQ|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|C|817
6PCQ|1|I|G|818
6PCQ|1|I|A|819
6PCQ|1|I|A|820
6PCQ|1|I|A|821
6PCQ|1|I|G|822
*
6PCQ|1|I|C|835
6PCQ|1|I|G|836
6PCQ|1|I|C|837
6PCQ|1|I|C|838
*
6PCQ|1|I|G|940
6PCQ|1|I|A|941
6PCQ|1|I|G|942
6PCQ|1|I|A|943
6PCQ|1|I|C|944
6PCQ|1|I|A|945
6PCQ|1|I|C|946
*
6PCQ|1|I|G|971
6PCQ|1|I|A|972
6PCQ|1|I|A|973
6PCQ|1|I|G|974
6PCQ|1|I|A|975
6PCQ|1|I|G|976
*
6PCQ|1|I|C|987
6PCQ|1|I|A|988
6PCQ|1|I|G|989
6PCQ|1|I|A|990
6PCQ|1|I|C|991
*
6PCQ|1|I|G|1163
6PCQ|1|I|C|1164
*
6PCQ|1|I|G|1185
6PCQ|1|I|G|1186
6PCQ|1|I|G|1187
6PCQ|1|I|U|1188
6PCQ|1|I|A|1189
6PCQ|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15