J7_6PCR_001

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PCR|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCR|1|I|C|8
6PCR|1|I|G|9
6PCR|1|I|A|10
6PCR|1|I|C|11
6PCR|1|I|U|12
6PCR|1|I|A|13
6PCR|1|I|A|14
6PCR|1|I|G|15
*
6PCR|1|I|U|525
6PCR|1|I|A|526
6PCR|1|I|C|527
6PCR|1|I|A|528
6PCR|1|I|A|529
6PCR|1|I|G|530
6PCR|1|I|C|531
*
6PCR|1|I|G|2018
6PCR|1|I|A|2019
6PCR|1|I|A|2020
6PCR|1|I|C|2021
6PCR|1|I|U|2022
6PCR|1|I|C|2023
*
6PCR|1|I|G|2040
6PCR|1|I|U|2041
6PCR|1|I|A|2042
6PCR|1|I|C|2043
*
6PCR|1|I|G|2625
6PCR|1|I|C|2626
6PCR|1|I|G|2627
6PCR|1|I|C|2628
6PCR|1|I|U|2629
6PCR|1|I|G|2630
*
6PCR|1|I|C|2788
6PCR|1|I|C|2789
*
6PCR|1|I|G|2894
6PCR|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13