J7_6PCR_002

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6PCR|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCR|1|I|C|817
6PCR|1|I|G|818
6PCR|1|I|A|819
6PCR|1|I|A|820
6PCR|1|I|A|821
6PCR|1|I|G|822
*
6PCR|1|I|C|835
6PCR|1|I|G|836
6PCR|1|I|C|837
6PCR|1|I|C|838
*
6PCR|1|I|G|940
6PCR|1|I|A|941
6PCR|1|I|G|942
6PCR|1|I|A|943
6PCR|1|I|C|944
6PCR|1|I|A|945
6PCR|1|I|C|946
*
6PCR|1|I|G|971
6PCR|1|I|A|972
6PCR|1|I|A|973
6PCR|1|I|G|974
6PCR|1|I|A|975
6PCR|1|I|G|976
*
6PCR|1|I|C|987
6PCR|1|I|A|988
6PCR|1|I|G|989
6PCR|1|I|A|990
6PCR|1|I|C|991
*
6PCR|1|I|G|1163
6PCR|1|I|C|1164
*
6PCR|1|I|G|1185
6PCR|1|I|G|1186
6PCR|1|I|G|1187
6PCR|1|I|U|1188
6PCR|1|I|A|1189
6PCR|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15