J7_6PCS_001

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PCS|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCS|1|I|C|8
6PCS|1|I|G|9
6PCS|1|I|A|10
6PCS|1|I|C|11
6PCS|1|I|U|12
6PCS|1|I|A|13
6PCS|1|I|A|14
6PCS|1|I|G|15
*
6PCS|1|I|U|525
6PCS|1|I|A|526
6PCS|1|I|C|527
6PCS|1|I|A|528
6PCS|1|I|A|529
6PCS|1|I|G|530
6PCS|1|I|C|531
*
6PCS|1|I|G|2018
6PCS|1|I|A|2019
6PCS|1|I|A|2020
6PCS|1|I|C|2021
6PCS|1|I|U|2022
6PCS|1|I|C|2023
*
6PCS|1|I|G|2040
6PCS|1|I|U|2041
6PCS|1|I|A|2042
6PCS|1|I|C|2043
*
6PCS|1|I|G|2625
6PCS|1|I|C|2626
6PCS|1|I|G|2627
6PCS|1|I|C|2628
6PCS|1|I|U|2629
6PCS|1|I|G|2630
*
6PCS|1|I|C|2788
6PCS|1|I|C|2789
*
6PCS|1|I|G|2894
6PCS|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13