J7_6PCS_002

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6PCS|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCS|1|I|C|817
6PCS|1|I|G|818
6PCS|1|I|A|819
6PCS|1|I|A|820
6PCS|1|I|A|821
6PCS|1|I|G|822
*
6PCS|1|I|C|835
6PCS|1|I|G|836
6PCS|1|I|C|837
6PCS|1|I|C|838
*
6PCS|1|I|G|940
6PCS|1|I|A|941
6PCS|1|I|G|942
6PCS|1|I|A|943
6PCS|1|I|C|944
6PCS|1|I|A|945
6PCS|1|I|C|946
*
6PCS|1|I|G|971
6PCS|1|I|A|972
6PCS|1|I|A|973
6PCS|1|I|G|974
6PCS|1|I|A|975
6PCS|1|I|G|976
*
6PCS|1|I|C|987
6PCS|1|I|A|988
6PCS|1|I|G|989
6PCS|1|I|A|990
6PCS|1|I|C|991
*
6PCS|1|I|G|1163
6PCS|1|I|C|1164
*
6PCS|1|I|G|1185
6PCS|1|I|G|1186
6PCS|1|I|G|1187
6PCS|1|I|U|1188
6PCS|1|I|A|1189
6PCS|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15