J7_6PCT_001

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6PCT|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCT|1|I|C|8
6PCT|1|I|G|9
6PCT|1|I|A|10
6PCT|1|I|C|11
6PCT|1|I|U|12
6PCT|1|I|A|13
6PCT|1|I|A|14
6PCT|1|I|G|15
*
6PCT|1|I|U|525
6PCT|1|I|A|526
6PCT|1|I|C|527
6PCT|1|I|A|528
6PCT|1|I|A|529
6PCT|1|I|G|530
6PCT|1|I|C|531
*
6PCT|1|I|G|2018
6PCT|1|I|A|2019
6PCT|1|I|A|2020
6PCT|1|I|C|2021
6PCT|1|I|U|2022
6PCT|1|I|C|2023
*
6PCT|1|I|G|2040
6PCT|1|I|U|2041
6PCT|1|I|A|2042
6PCT|1|I|C|2043
*
6PCT|1|I|G|2625
6PCT|1|I|C|2626
6PCT|1|I|G|2627
6PCT|1|I|C|2628
6PCT|1|I|U|2629
6PCT|1|I|G|2630
*
6PCT|1|I|C|2788
6PCT|1|I|C|2789
*
6PCT|1|I|G|2894
6PCT|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13