J7_6PCT_002

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6PCT|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCT|1|I|C|817
6PCT|1|I|G|818
6PCT|1|I|A|819
6PCT|1|I|A|820
6PCT|1|I|A|821
6PCT|1|I|G|822
*
6PCT|1|I|C|835
6PCT|1|I|G|836
6PCT|1|I|C|837
6PCT|1|I|C|838
*
6PCT|1|I|G|940
6PCT|1|I|A|941
6PCT|1|I|G|942
6PCT|1|I|A|943
6PCT|1|I|C|944
6PCT|1|I|A|945
6PCT|1|I|C|946
*
6PCT|1|I|G|971
6PCT|1|I|A|972
6PCT|1|I|A|973
6PCT|1|I|G|974
6PCT|1|I|A|975
6PCT|1|I|G|976
*
6PCT|1|I|C|987
6PCT|1|I|A|988
6PCT|1|I|G|989
6PCT|1|I|A|990
6PCT|1|I|C|991
*
6PCT|1|I|G|1163
6PCT|1|I|C|1164
*
6PCT|1|I|G|1185
6PCT|1|I|G|1186
6PCT|1|I|G|1187
6PCT|1|I|U|1188
6PCT|1|I|A|1189
6PCT|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15