J7_6Q8Y_001
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|C|949
6Q8Y|1|BQ|G|950
6Q8Y|1|BQ|A|951
6Q8Y|1|BQ|A|952
6Q8Y|1|BQ|G|953
6Q8Y|1|BQ|U|954
*
6Q8Y|1|BQ|A|967
6Q8Y|1|BQ|G|968
*
6Q8Y|1|BQ|U|1114
6Q8Y|1|BQ|G|1115
6Q8Y|1|BQ|G|1116
6Q8Y|1|BQ|G|1117
*
6Q8Y|1|BQ|C|1141
6Q8Y|1|BQ|G|1142
6Q8Y|1|BQ|A|1143
6Q8Y|1|BQ|U|1144
6Q8Y|1|BQ|G|1145
6Q8Y|1|BQ|C|1146
*
6Q8Y|1|BQ|G|1157
6Q8Y|1|BQ|A|1158
6Q8Y|1|BQ|A|1159
6Q8Y|1|BQ|C|1160
6Q8Y|1|BQ|G|1161
*
6Q8Y|1|BQ|C|1338
6Q8Y|1|BQ|C|1339
*
6Q8Y|1|BQ|G|1365
6Q8Y|1|BQ|A|1366
6Q8Y|1|BQ|G|1367
6Q8Y|1|BQ|U|1368
6Q8Y|1|BQ|A|1369
6Q8Y|1|BQ|G|1370
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BK
- 60S ribosomal protein L33-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
Coloring options: