3D structure

PDB id
6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGACUAAGC*GUACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
37 nucleotides
Bulged bases
6Q9A|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Q9A|1|1|C|8
6Q9A|1|1|G|9
6Q9A|1|1|A|10
6Q9A|1|1|C|11
6Q9A|1|1|U|12
6Q9A|1|1|A|13
6Q9A|1|1|A|14
6Q9A|1|1|G|15
6Q9A|1|1|C|16
*
6Q9A|1|1|G|524
6Q9A|1|1|U|525
6Q9A|1|1|A|526
6Q9A|1|1|C|527
6Q9A|1|1|A|528
6Q9A|1|1|A|529
6Q9A|1|1|G|530
6Q9A|1|1|C|531
*
6Q9A|1|1|G|2018
6Q9A|1|1|A|2019
6Q9A|1|1|A|2020
6Q9A|1|1|C|2021
6Q9A|1|1|U|2022
6Q9A|1|1|C|2023
*
6Q9A|1|1|G|2040
6Q9A|1|1|U|2041
6Q9A|1|1|A|2042
6Q9A|1|1|C|2043
*
6Q9A|1|1|G|2625
6Q9A|1|1|C|2626
6Q9A|1|1|G|2627
6Q9A|1|1|C|2628
6Q9A|1|1|U|2629
6Q9A|1|1|G|2630
*
6Q9A|1|1|C|2788
6Q9A|1|1|C|2789
*
6Q9A|1|1|G|2894
6Q9A|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:

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