3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length
35 nucleotides
Bulged bases
6QNQ|1|1H|G|530, 6QNQ|1|1H|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6QNQ|1|1H|A|8
6QNQ|1|1H|U|9
6QNQ|1|1H|G|10
6QNQ|1|1H|G|11
6QNQ|1|1H|U|12
6QNQ|1|1H|A|13
6QNQ|1|1H|A|14
6QNQ|1|1H|G|15
*
6QNQ|1|1H|U|525
6QNQ|1|1H|A|526
6QNQ|1|1H|C|527
6QNQ|1|1H|A|528
6QNQ|1|1H|A|529
6QNQ|1|1H|G|530
6QNQ|1|1H|C|531
*
6QNQ|1|1H|G|2018
6QNQ|1|1H|A|2019
6QNQ|1|1H|A|2020
6QNQ|1|1H|C|2021
6QNQ|1|1H|U|2022
6QNQ|1|1H|G|2023
*
6QNQ|1|1H|C|2040
6QNQ|1|1H|U|2041
6QNQ|1|1H|A|2042
6QNQ|1|1H|C|2043
*
6QNQ|1|1H|G|2625
6QNQ|1|1H|C|2626
6QNQ|1|1H|G|2627
6QNQ|1|1H|C|2628
6QNQ|1|1H|A|2629
6QNQ|1|1H|G|2630
*
6QNQ|1|1H|C|2788
6QNQ|1|1H|C|2789
*
6QNQ|1|1H|G|2894
6QNQ|1|1H|U|2895

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L3
Chain 58
50S ribosomal protein L13
Chain C8
50S ribosomal protein L20
Chain E8
50S ribosomal protein L22
Chain N8
50S ribosomal protein L32

Coloring options:

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