3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
6QUL|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6QUL|1|A|C|817
6QUL|1|A|G|818
6QUL|1|A|A|819
6QUL|1|A|A|820
6QUL|1|A|A|821
6QUL|1|A|G|822
*
6QUL|1|A|C|835
6QUL|1|A|G|836
6QUL|1|A|C|837
6QUL|1|A|C|838
*
6QUL|1|A|G|940
6QUL|1|A|A|941
6QUL|1|A|G|942
6QUL|1|A|A|943
6QUL|1|A|C|944
6QUL|1|A|A|945
6QUL|1|A|C|946
*
6QUL|1|A|G|971
6QUL|1|A|A|972
6QUL|1|A|A|973
6QUL|1|A|G|974
6QUL|1|A|A|975
6QUL|1|A|G|976
*
6QUL|1|A|C|987
6QUL|1|A|A|988
6QUL|1|A|G|989
6QUL|1|A|A|990
6QUL|1|A|C|991
*
6QUL|1|A|G|1163
6QUL|1|A|C|1164
*
6QUL|1|A|G|1185
6QUL|1|A|G|1186
6QUL|1|A|G|1187
6QUL|1|A|U|1188
6QUL|1|A|A|1189
6QUL|1|A|G|1190

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L15
Chain R
50S ribosomal protein L20
Chain S
50S ribosomal protein L21
Chain a
50S ribosomal protein L30
Chain e
50S ribosomal protein L35

Coloring options:

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