J7_6R87_001
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6R87|1|1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R87|1|1|C|949
6R87|1|1|G|950
6R87|1|1|A|951
6R87|1|1|A|952
6R87|1|1|G|953
6R87|1|1|U|954
*
6R87|1|1|A|967
6R87|1|1|G|968
*
6R87|1|1|U|1114
6R87|1|1|G|1115
6R87|1|1|G|1116
6R87|1|1|G|1117
*
6R87|1|1|C|1141
6R87|1|1|G|1142
6R87|1|1|A|1143
6R87|1|1|U|1144
6R87|1|1|G|1145
6R87|1|1|C|1146
*
6R87|1|1|G|1157
6R87|1|1|A|1158
6R87|1|1|A|1159
6R87|1|1|C|1160
6R87|1|1|G|1161
*
6R87|1|1|C|1338
6R87|1|1|C|1339
*
6R87|1|1|G|1365
6R87|1|1|A|1366
6R87|1|1|G|1367
6R87|1|1|U|1368
6R87|1|1|A|1369
6R87|1|1|G|1370
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain J
- 60S ribosomal protein L7-A
- Chain N
- 60S ribosomal protein L13-A
- Chain S
- 60S ribosomal protein L18-A
- Chain V
- 60S ribosomal protein L21-A
- Chain c
- 60S ribosomal protein L28
- Chain d
- 60S ribosomal protein L29
- Chain g
- 60S ribosomal protein L32
- Chain h
- 60S ribosomal protein L33-A
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