J7_6SKG_001

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAUU*AG*UAGG*CGAGAG*CAGAC*GC*GGGUAG

Length

31 nucleotides

Bulged bases

6SKG|1|BA|G|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|C|945
6SKG|1|BA|G|946
6SKG|1|BA|A|947
6SKG|1|BA|A|948
6SKG|1|BA|U|949
6SKG|1|BA|U|950
*
6SKG|1|BA|A|963
6SKG|1|BA|G|964
*
6SKG|1|BA|U|1074
6SKG|1|BA|A|1075
6SKG|1|BA|G|1076
6SKG|1|BA|G|1077
*
6SKG|1|BA|C|1099
6SKG|1|BA|G|1100
6SKG|1|BA|A|1101
6SKG|1|BA|G|1102
6SKG|1|BA|A|1103
6SKG|1|BA|G|1104
*
6SKG|1|BA|C|1115
6SKG|1|BA|A|1116
6SKG|1|BA|G|1117
6SKG|1|BA|A|1118
6SKG|1|BA|C|1119
*
6SKG|1|BA|G|1295
6SKG|1|BA|C|1296
*
6SKG|1|BA|G|1321
6SKG|1|BA|G|1322
6SKG|1|BA|G|1323
6SKG|1|BA|U|1324
6SKG|1|BA|A|1325
6SKG|1|BA|G|1326

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L15

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e

Chain Bf

Ribosomal protein eL35A