J7_6SNT_001

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

6SNT|1|1|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|1|C|949
6SNT|1|1|G|950
6SNT|1|1|A|951
6SNT|1|1|A|952
6SNT|1|1|G|953
6SNT|1|1|U|954
*
6SNT|1|1|A|967
6SNT|1|1|G|968
*
6SNT|1|1|U|1114
6SNT|1|1|G|1115
6SNT|1|1|G|1116
6SNT|1|1|G|1117
*
6SNT|1|1|C|1141
6SNT|1|1|G|1142
6SNT|1|1|A|1143
6SNT|1|1|U|1144
6SNT|1|1|G|1145
6SNT|1|1|C|1146
*
6SNT|1|1|G|1157
6SNT|1|1|A|1158
6SNT|1|1|A|1159
6SNT|1|1|C|1160
6SNT|1|1|G|1161
*
6SNT|1|1|C|1338
6SNT|1|1|C|1339
*
6SNT|1|1|G|1365
6SNT|1|1|A|1366
6SNT|1|1|G|1367
6SNT|1|1|U|1368
6SNT|1|1|A|1369
6SNT|1|1|G|1370

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain ak

60S ribosomal protein L33-A

Chain al

60S ribosomal protein L32

Chain ao

60S ribosomal protein L29

Chain ap

60S ribosomal protein L28

Chain j

60S ribosomal protein L4-A

Chain m

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L13-A

Chain w

60S ribosomal protein L18-A

Chain z

60S ribosomal protein L21-A