J7_6SPB_001
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UGAAGAAG*UACAAGC*GAAAUC*GUAU*ACGUUU*AC*GG
- Length
- 35 nucleotides
- Bulged bases
- 6SPB|1|A|A|2008
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPB|1|A|U|8
6SPB|1|A|G|9
6SPB|1|A|A|10
6SPB|1|A|A|11
6SPB|1|A|G|12
6SPB|1|A|A|13
6SPB|1|A|A|14
6SPB|1|A|G|15
*
6SPB|1|A|U|516
6SPB|1|A|A|517
6SPB|1|A|C|518
6SPB|1|A|A|519
6SPB|1|A|A|520
6SPB|1|A|G|521
6SPB|1|A|C|522
*
6SPB|1|A|G|2005
6SPB|1|A|A|2006
6SPB|1|A|A|2007
6SPB|1|A|A|2008
6SPB|1|A|U|2009
6SPB|1|A|C|2010
*
6SPB|1|A|G|2027
6SPB|1|A|U|2028
6SPB|1|A|A|2029
6SPB|1|A|U|2030
*
6SPB|1|A|A|2612
6SPB|1|A|C|2613
6SPB|1|A|G|2614
6SPB|1|A|U|2615
6SPB|1|A|U|2616
6SPB|1|A|U|2617
*
6SPB|1|A|A|2775
6SPB|1|A|C|2776
*
6SPB|1|A|G|2881
6SPB|1|A|G|2882
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
Coloring options: