3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6SZS|1|A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SZS|1|A|C|8
6SZS|1|A|G|9
6SZS|1|A|A|10
6SZS|1|A|C|11
6SZS|1|A|U|12
6SZS|1|A|A|13
6SZS|1|A|A|14
6SZS|1|A|G|15
*
6SZS|1|A|U|525
6SZS|1|A|A|526
6SZS|1|A|C|527
6SZS|1|A|A|528
6SZS|1|A|A|529
6SZS|1|A|G|530
6SZS|1|A|C|531
*
6SZS|1|A|G|2018
6SZS|1|A|A|2019
6SZS|1|A|A|2020
6SZS|1|A|C|2021
6SZS|1|A|U|2022
6SZS|1|A|C|2023
*
6SZS|1|A|G|2040
6SZS|1|A|U|2041
6SZS|1|A|A|2042
6SZS|1|A|C|2043
*
6SZS|1|A|G|2625
6SZS|1|A|C|2626
6SZS|1|A|G|2627
6SZS|1|A|C|2628
6SZS|1|A|U|2629
6SZS|1|A|G|2630
*
6SZS|1|A|C|2788
6SZS|1|A|C|2789
*
6SZS|1|A|G|2894
6SZS|1|A|G|2895

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22

Coloring options:

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