J7_6T83_002

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

6T83|1|Aa|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|Aa|C|949
6T83|1|Aa|G|950
6T83|1|Aa|A|951
6T83|1|Aa|A|952
6T83|1|Aa|G|953
6T83|1|Aa|U|954
*
6T83|1|Aa|A|967
6T83|1|Aa|G|968
*
6T83|1|Aa|U|1114
6T83|1|Aa|G|1115
6T83|1|Aa|G|1116
6T83|1|Aa|G|1117
*
6T83|1|Aa|C|1141
6T83|1|Aa|G|1142
6T83|1|Aa|A|1143
6T83|1|Aa|U|1144
6T83|1|Aa|G|1145
6T83|1|Aa|C|1146
*
6T83|1|Aa|G|1157
6T83|1|Aa|A|1158
6T83|1|Aa|A|1159
6T83|1|Aa|C|1160
6T83|1|Aa|G|1161
*
6T83|1|Aa|C|1338
6T83|1|Aa|C|1339
*
6T83|1|Aa|G|1365
6T83|1|Aa|A|1366
6T83|1|Aa|G|1367
6T83|1|Aa|U|1368
6T83|1|Aa|A|1369
6T83|1|Aa|G|1370

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L18-A

Chain Bb

5S ribosomal RNA; 5S rRNA

Chain E

60S ribosomal protein L21-A

Chain Fa

60S ribosomal protein L4-A

Chain Ia

60S ribosomal protein L7-A

Chain L

60S ribosomal protein L28

Chain M

60S ribosomal protein L29

Chain Na

60S ribosomal protein L13-A

Chain P

60S ribosomal protein L32

Chain Q

60S ribosomal protein L33-A