J7_6TBV_001

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6TBV|1|23S1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TBV|1|23S1|C|8
6TBV|1|23S1|G|9
6TBV|1|23S1|A|10
6TBV|1|23S1|C|11
6TBV|1|23S1|U|12
6TBV|1|23S1|A|13
6TBV|1|23S1|A|14
6TBV|1|23S1|G|15
*
6TBV|1|23S1|U|525
6TBV|1|23S1|A|526
6TBV|1|23S1|C|527
6TBV|1|23S1|A|528
6TBV|1|23S1|A|529
6TBV|1|23S1|G|530
6TBV|1|23S1|C|531
*
6TBV|1|23S1|G|2018
6TBV|1|23S1|A|2019
6TBV|1|23S1|A|2020
6TBV|1|23S1|C|2021
6TBV|1|23S1|U|2022
6TBV|1|23S1|C|2023
*
6TBV|1|23S1|G|2040
6TBV|1|23S1|U|2041
6TBV|1|23S1|A|2042
6TBV|1|23S1|C|2043
*
6TBV|1|23S1|G|2625
6TBV|1|23S1|C|2626
6TBV|1|23S1|G|2627
6TBV|1|23S1|C|2628
6TBV|1|23S1|U|2629
6TBV|1|23S1|G|2630
*
6TBV|1|23S1|C|2788
6TBV|1|23S1|C|2789
*
6TBV|1|23S1|G|2894
6TBV|1|23S1|G|2895

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L031

50S ribosomal protein L3

Chain L131

50S ribosomal protein L13

Chain L201

50S ribosomal protein L20

Chain L221

50S ribosomal protein L22

Chain L321

50S ribosomal protein L32