J7_6TH6_001

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAAUU*AGC*GUAGG*CGAGAG*CAGAC*GC*GGGUAG

Length

33 nucleotides

Bulged bases

6TH6|1|BA|G|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|C|945
6TH6|1|BA|G|946
6TH6|1|BA|A|947
6TH6|1|BA|A|948
6TH6|1|BA|U|949
6TH6|1|BA|U|950
*
6TH6|1|BA|A|963
6TH6|1|BA|G|964
6TH6|1|BA|C|965
*
6TH6|1|BA|G|1073
6TH6|1|BA|U|1074
6TH6|1|BA|A|1075
6TH6|1|BA|G|1076
6TH6|1|BA|G|1077
*
6TH6|1|BA|C|1099
6TH6|1|BA|G|1100
6TH6|1|BA|A|1101
6TH6|1|BA|G|1102
6TH6|1|BA|A|1103
6TH6|1|BA|G|1104
*
6TH6|1|BA|C|1115
6TH6|1|BA|A|1116
6TH6|1|BA|G|1117
6TH6|1|BA|A|1118
6TH6|1|BA|C|1119
*
6TH6|1|BA|G|1295
6TH6|1|BA|C|1296
*
6TH6|1|BA|G|1321
6TH6|1|BA|G|1322
6TH6|1|BA|G|1323
6TH6|1|BA|U|1324
6TH6|1|BA|A|1325
6TH6|1|BA|G|1326

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L15

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e