J7_6TH6_002

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UUUA*UUUG*CA*UGC*GC*GCGAACC*(OMG)AUGACAGAAAA

Length

34 nucleotides

Bulged bases

6TH6|1|BA|U|2188, 6TH6|1|BA|A|2534, 6TH6|1|BA|A|2536, 6TH6|1|BA|A|2537

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|U|2186
6TH6|1|BA|U|2187
6TH6|1|BA|U|2188
6TH6|1|BA|A|2189
*
6TH6|1|BA|U|2345
6TH6|1|BA|U|2346
6TH6|1|BA|U|2347
6TH6|1|BA|G|2348
*
6TH6|1|BA|C|2361
6TH6|1|BA|A|2362
*
6TH6|1|BA|U|2384
6TH6|1|BA|G|2385
6TH6|1|BA|C|2386
*
6TH6|1|BA|G|2428
6TH6|1|BA|C|2429
*
6TH6|1|BA|G|2495
6TH6|1|BA|C|2496
6TH6|1|BA|G|2497
6TH6|1|BA|A|2498
6TH6|1|BA|A|2499
6TH6|1|BA|C|2500
6TH6|1|BA|C|2501
*
6TH6|1|BA|OMG|2528
6TH6|1|BA|A|2529
6TH6|1|BA|U|2530
6TH6|1|BA|G|2531
6TH6|1|BA|A|2532
6TH6|1|BA|C|2533
6TH6|1|BA|A|2534
6TH6|1|BA|G|2535
6TH6|1|BA|A|2536
6TH6|1|BA|A|2537
6TH6|1|BA|A|2538
6TH6|1|BA|A|2539

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain BU

50S ribosomal protein L21e

Chain Bl

50S ribosomal protein L44e