3D structure

PDB id
6TNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
6TNU|1|BQ|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6TNU|1|BQ|C|949
6TNU|1|BQ|G|950
6TNU|1|BQ|A|951
6TNU|1|BQ|A|952
6TNU|1|BQ|G|953
6TNU|1|BQ|U|954
*
6TNU|1|BQ|A|967
6TNU|1|BQ|G|968
*
6TNU|1|BQ|U|1114
6TNU|1|BQ|G|1115
6TNU|1|BQ|G|1116
6TNU|1|BQ|G|1117
*
6TNU|1|BQ|C|1141
6TNU|1|BQ|G|1142
6TNU|1|BQ|A|1143
6TNU|1|BQ|U|1144
6TNU|1|BQ|G|1145
6TNU|1|BQ|C|1146
*
6TNU|1|BQ|G|1157
6TNU|1|BQ|A|1158
6TNU|1|BQ|A|1159
6TNU|1|BQ|C|1160
6TNU|1|BQ|G|1161
*
6TNU|1|BQ|C|1338
6TNU|1|BQ|C|1339
*
6TNU|1|BQ|G|1365
6TNU|1|BQ|A|1366
6TNU|1|BQ|G|1367
6TNU|1|BQ|U|1368
6TNU|1|BQ|A|1369
6TNU|1|BQ|G|1370

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AJ
60S ribosomal protein L13-A
Chain AR
60S ribosomal protein L28
Chain AV
60S ribosomal protein L29
Chain BB
60S ribosomal protein L18-A
Chain BE
60S ribosomal protein L4-A
Chain BG
60S ribosomal protein L32
Chain BJ
60S ribosomal protein L21-A
Chain BK
60S ribosomal protein L33-A
Chain BO
60S ribosomal protein L7-A
Chain BR
5S ribosomal RNA; 5S rRNA

Coloring options:

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