J7_6TPQ_002
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAAAU*AGC*GUCAG*CGAAAG*CAGAC*GAC*GUGGUAG
- Length
- 35 nucleotides
- Bulged bases
- 6TPQ|1|U|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TPQ|1|U|C|862
6TPQ|1|U|G|863
6TPQ|1|U|A|864
6TPQ|1|U|A|865
6TPQ|1|U|A|866
6TPQ|1|U|U|867
*
6TPQ|1|U|A|880
6TPQ|1|U|G|881
6TPQ|1|U|C|882
*
6TPQ|1|U|G|986
6TPQ|1|U|U|987
6TPQ|1|U|C|988
6TPQ|1|U|A|989
6TPQ|1|U|G|990
*
6TPQ|1|U|C|1015
6TPQ|1|U|G|1016
6TPQ|1|U|A|1017
6TPQ|1|U|A|1018
6TPQ|1|U|A|1019
6TPQ|1|U|G|1020
*
6TPQ|1|U|C|1031
6TPQ|1|U|A|1032
6TPQ|1|U|G|1033
6TPQ|1|U|A|1034
6TPQ|1|U|C|1035
*
6TPQ|1|U|G|1207
6TPQ|1|U|A|1208
6TPQ|1|U|C|1209
*
6TPQ|1|U|G|1223
6TPQ|1|U|U|1224
6TPQ|1|U|G|1225
6TPQ|1|U|G|1226
6TPQ|1|U|U|1227
6TPQ|1|U|A|1228
6TPQ|1|U|G|1229
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain e
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L20
- Chain k
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L35
- Chain w
- 50S ribosomal protein L30
Coloring options: