J7_6UO1_002

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6UO1|1|2A|A|945, 6UO1|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|2A|C|817
6UO1|1|2A|G|818
6UO1|1|2A|A|819
6UO1|1|2A|A|820
6UO1|1|2A|A|821
6UO1|1|2A|U|822
*
6UO1|1|2A|A|835
6UO1|1|2A|G|836
*
6UO1|1|2A|U|943
6UO1|1|2A|G|944
6UO1|1|2A|A|945
6UO1|1|2A|G|946
*
6UO1|1|2A|C|971
6UO1|1|2A|G|972
6UO1|1|2A|A|973
6UO1|1|2A|G|974
6UO1|1|2A|C|975
6UO1|1|2A|G|975|||A
6UO1|1|2A|C|976
*
6UO1|1|2A|G|987
6UO1|1|2A|A|988
6UO1|1|2A|G|989
6UO1|1|2A|A|990
6UO1|1|2A|C|991
*
6UO1|1|2A|G|1163
6UO1|1|2A|G|1164
*
6UO1|1|2A|C|1185
6UO1|1|2A|G|1186
6UO1|1|2A|G|1187
6UO1|1|2A|U|1188
6UO1|1|2A|A|1189
6UO1|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21