J7_6V39_001

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UAAUUAAG*UACAAGC*GAAAUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6V39|1|AN1|A|2017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|AN1|U|15
6V39|1|AN1|A|16
6V39|1|AN1|A|17
6V39|1|AN1|U|18
6V39|1|AN1|U|19
6V39|1|AN1|A|20
6V39|1|AN1|A|21
6V39|1|AN1|G|22
*
6V39|1|AN1|U|524
6V39|1|AN1|A|525
6V39|1|AN1|C|526
6V39|1|AN1|A|527
6V39|1|AN1|A|528
6V39|1|AN1|G|529
6V39|1|AN1|C|530
*
6V39|1|AN1|G|2014
6V39|1|AN1|A|2015
6V39|1|AN1|A|2016
6V39|1|AN1|A|2017
6V39|1|AN1|U|2018
6V39|1|AN1|C|2019
*
6V39|1|AN1|G|2036
6V39|1|AN1|U|2037
6V39|1|AN1|A|2038
6V39|1|AN1|C|2039
*
6V39|1|AN1|G|2621
6V39|1|AN1|C|2622
6V39|1|AN1|G|2623
6V39|1|AN1|C|2624
6V39|1|AN1|U|2625
6V39|1|AN1|G|2626
*
6V39|1|AN1|C|2784
6V39|1|AN1|C|2785
*
6V39|1|AN1|G|2890
6V39|1|AN1|G|2891

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32