3D structure

PDB id
6V3B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.91 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAG*CAAGAG*CAGAC*GA*UGGUAG
Length
36 nucleotides
Bulged bases
6V3B|1|AN1|A|942
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6V3B|1|AN1|C|815
6V3B|1|AN1|G|816
6V3B|1|AN1|A|817
6V3B|1|AN1|A|818
6V3B|1|AN1|A|819
6V3B|1|AN1|G|820
*
6V3B|1|AN1|C|833
6V3B|1|AN1|G|834
6V3B|1|AN1|C|835
6V3B|1|AN1|C|836
*
6V3B|1|AN1|G|937
6V3B|1|AN1|A|938
6V3B|1|AN1|G|939
6V3B|1|AN1|A|940
6V3B|1|AN1|C|941
6V3B|1|AN1|A|942
6V3B|1|AN1|G|943
*
6V3B|1|AN1|C|968
6V3B|1|AN1|A|969
6V3B|1|AN1|A|970
6V3B|1|AN1|G|971
6V3B|1|AN1|A|972
6V3B|1|AN1|G|973
*
6V3B|1|AN1|C|984
6V3B|1|AN1|A|985
6V3B|1|AN1|G|986
6V3B|1|AN1|A|987
6V3B|1|AN1|C|988
*
6V3B|1|AN1|G|1161
6V3B|1|AN1|A|1162
*
6V3B|1|AN1|U|1180
6V3B|1|AN1|G|1181
6V3B|1|AN1|G|1182
6V3B|1|AN1|U|1183
6V3B|1|AN1|A|1184
6V3B|1|AN1|G|1185

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain B
5S ribosomal RNA; 5S rRNA
Chain K
50S ribosomal protein L15
Chain P
50S ribosomal protein L20
Chain Q
50S ribosomal protein L21
Chain Y
50S ribosomal protein L30

Coloring options:

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