3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6VWL|1|2|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWL|1|2|C|8
6VWL|1|2|G|9
6VWL|1|2|A|10
6VWL|1|2|C|11
6VWL|1|2|U|12
6VWL|1|2|A|13
6VWL|1|2|A|14
6VWL|1|2|G|15
*
6VWL|1|2|U|525
6VWL|1|2|A|526
6VWL|1|2|C|527
6VWL|1|2|A|528
6VWL|1|2|A|529
6VWL|1|2|G|530
6VWL|1|2|C|531
*
6VWL|1|2|G|2018
6VWL|1|2|A|2019
6VWL|1|2|A|2020
6VWL|1|2|C|2021
6VWL|1|2|U|2022
6VWL|1|2|C|2023
*
6VWL|1|2|G|2040
6VWL|1|2|U|2041
6VWL|1|2|A|2042
6VWL|1|2|C|2043
*
6VWL|1|2|G|2625
6VWL|1|2|C|2626
6VWL|1|2|G|2627
6VWL|1|2|C|2628
6VWL|1|2|U|2629
6VWL|1|2|G|2630
*
6VWL|1|2|C|2788
6VWL|1|2|C|2789
*
6VWL|1|2|G|2894
6VWL|1|2|G|2895

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain G
50S ribosomal protein L13
Chain O
50S ribosomal protein L20
Chain Q
50S ribosomal protein L22
Chain Y
50S ribosomal protein L32

Coloring options:

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