J7_6VWL_002

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6VWL|1|2|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|C|817
6VWL|1|2|G|818
6VWL|1|2|A|819
6VWL|1|2|A|820
6VWL|1|2|A|821
6VWL|1|2|G|822
*
6VWL|1|2|C|835
6VWL|1|2|G|836
6VWL|1|2|C|837
6VWL|1|2|C|838
*
6VWL|1|2|G|940
6VWL|1|2|A|941
6VWL|1|2|G|942
6VWL|1|2|A|943
6VWL|1|2|C|944
6VWL|1|2|A|945
6VWL|1|2|C|946
*
6VWL|1|2|G|971
6VWL|1|2|A|972
6VWL|1|2|A|973
6VWL|1|2|G|974
6VWL|1|2|A|975
6VWL|1|2|G|976
*
6VWL|1|2|C|987
6VWL|1|2|A|988
6VWL|1|2|G|989
6VWL|1|2|A|990
6VWL|1|2|C|991
*
6VWL|1|2|G|1163
6VWL|1|2|C|1164
*
6VWL|1|2|G|1185
6VWL|1|2|G|1186
6VWL|1|2|G|1187
6VWL|1|2|U|1188
6VWL|1|2|A|1189
6VWL|1|2|G|1190

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AB

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain X

50S ribosomal protein L30