J7_6VWM_001

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6VWM|1|2|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|C|8
6VWM|1|2|G|9
6VWM|1|2|A|10
6VWM|1|2|C|11
6VWM|1|2|U|12
6VWM|1|2|A|13
6VWM|1|2|A|14
6VWM|1|2|G|15
*
6VWM|1|2|U|525
6VWM|1|2|A|526
6VWM|1|2|C|527
6VWM|1|2|A|528
6VWM|1|2|A|529
6VWM|1|2|G|530
6VWM|1|2|C|531
*
6VWM|1|2|G|2018
6VWM|1|2|A|2019
6VWM|1|2|A|2020
6VWM|1|2|C|2021
6VWM|1|2|U|2022
6VWM|1|2|C|2023
*
6VWM|1|2|G|2040
6VWM|1|2|U|2041
6VWM|1|2|A|2042
6VWM|1|2|C|2043
*
6VWM|1|2|G|2625
6VWM|1|2|C|2626
6VWM|1|2|G|2627
6VWM|1|2|C|2628
6VWM|1|2|U|2629
6VWM|1|2|G|2630
*
6VWM|1|2|C|2788
6VWM|1|2|C|2789
*
6VWM|1|2|G|2894
6VWM|1|2|G|2895

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32