J7_6VWM_002

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6VWM|1|2|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|C|817
6VWM|1|2|G|818
6VWM|1|2|A|819
6VWM|1|2|A|820
6VWM|1|2|A|821
6VWM|1|2|G|822
*
6VWM|1|2|C|835
6VWM|1|2|G|836
6VWM|1|2|C|837
6VWM|1|2|C|838
*
6VWM|1|2|G|940
6VWM|1|2|A|941
6VWM|1|2|G|942
6VWM|1|2|A|943
6VWM|1|2|C|944
6VWM|1|2|A|945
6VWM|1|2|C|946
*
6VWM|1|2|G|971
6VWM|1|2|A|972
6VWM|1|2|A|973
6VWM|1|2|G|974
6VWM|1|2|A|975
6VWM|1|2|G|976
*
6VWM|1|2|C|987
6VWM|1|2|A|988
6VWM|1|2|G|989
6VWM|1|2|A|990
6VWM|1|2|C|991
*
6VWM|1|2|G|1163
6VWM|1|2|C|1164
*
6VWM|1|2|G|1185
6VWM|1|2|G|1186
6VWM|1|2|G|1187
6VWM|1|2|U|1188
6VWM|1|2|A|1189
6VWM|1|2|G|1190

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AB

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain X

50S ribosomal protein L30