J7_6VYS_001
3D structure
- PDB id
- 6VYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 6VYS|1|a|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VYS|1|a|C|8
6VYS|1|a|G|9
6VYS|1|a|A|10
6VYS|1|a|C|11
6VYS|1|a|U|12
6VYS|1|a|A|13
6VYS|1|a|A|14
6VYS|1|a|G|15
*
6VYS|1|a|U|525
6VYS|1|a|A|526
6VYS|1|a|C|527
6VYS|1|a|A|528
6VYS|1|a|A|529
6VYS|1|a|G|530
6VYS|1|a|C|531
*
6VYS|1|a|G|2018
6VYS|1|a|A|2019
6VYS|1|a|A|2020
6VYS|1|a|C|2021
6VYS|1|a|U|2022
6VYS|1|a|C|2023
*
6VYS|1|a|G|2040
6VYS|1|a|U|2041
6VYS|1|a|A|2042
6VYS|1|a|C|2043
*
6VYS|1|a|G|2625
6VYS|1|a|C|2626
6VYS|1|a|G|2627
6VYS|1|a|C|2628
6VYS|1|a|U|2629
6VYS|1|a|G|2630
*
6VYS|1|a|C|2788
6VYS|1|a|C|2789
*
6VYS|1|a|G|2894
6VYS|1|a|G|2895
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain j
- 50S ribosomal protein L3
- Chain s
- 50S ribosomal protein L13
- Chain z
- 50S ribosomal protein L20
Coloring options: