J7_6VYS_002
3D structure
- PDB id
- 6VYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 6VYS|1|a|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VYS|1|a|C|817
6VYS|1|a|G|818
6VYS|1|a|A|819
6VYS|1|a|A|820
6VYS|1|a|A|821
6VYS|1|a|G|822
*
6VYS|1|a|C|835
6VYS|1|a|G|836
6VYS|1|a|C|837
6VYS|1|a|C|838
*
6VYS|1|a|G|940
6VYS|1|a|A|941
6VYS|1|a|G|942
6VYS|1|a|A|943
6VYS|1|a|C|944
6VYS|1|a|A|945
6VYS|1|a|C|946
*
6VYS|1|a|G|971
6VYS|1|a|A|972
6VYS|1|a|A|973
6VYS|1|a|G|974
6VYS|1|a|A|975
6VYS|1|a|G|976
*
6VYS|1|a|C|987
6VYS|1|a|A|988
6VYS|1|a|G|989
6VYS|1|a|A|990
6VYS|1|a|C|991
*
6VYS|1|a|G|1163
6VYS|1|a|C|1164
*
6VYS|1|a|G|1185
6VYS|1|a|G|1186
6VYS|1|a|G|1187
6VYS|1|a|U|1188
6VYS|1|a|A|1189
6VYS|1|a|G|1190
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L21
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L30
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L20
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