3D structure

PDB id
6WD0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
6WD0|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WD0|1|1|C|817
6WD0|1|1|G|818
6WD0|1|1|A|819
6WD0|1|1|A|820
6WD0|1|1|A|821
6WD0|1|1|G|822
*
6WD0|1|1|C|835
6WD0|1|1|G|836
6WD0|1|1|C|837
*
6WD0|1|1|G|942
6WD0|1|1|A|943
6WD0|1|1|C|944
6WD0|1|1|A|945
6WD0|1|1|C|946
*
6WD0|1|1|G|971
6WD0|1|1|A|972
6WD0|1|1|A|973
6WD0|1|1|G|974
6WD0|1|1|A|975
6WD0|1|1|G|976
*
6WD0|1|1|C|987
6WD0|1|1|A|988
6WD0|1|1|G|989
6WD0|1|1|A|990
6WD0|1|1|C|991
*
6WD0|1|1|G|1163
6WD0|1|1|C|1164
*
6WD0|1|1|G|1185
6WD0|1|1|G|1186
6WD0|1|1|G|1187
6WD0|1|1|U|1188
6WD0|1|1|A|1189
6WD0|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain z
50S ribosomal protein L30

Coloring options:

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