3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
6WDA|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDA|1|1|C|817
6WDA|1|1|G|818
6WDA|1|1|A|819
6WDA|1|1|A|820
6WDA|1|1|A|821
6WDA|1|1|G|822
*
6WDA|1|1|C|835
6WDA|1|1|G|836
6WDA|1|1|C|837
6WDA|1|1|C|838
*
6WDA|1|1|G|940
6WDA|1|1|A|941
6WDA|1|1|G|942
6WDA|1|1|A|943
6WDA|1|1|C|944
6WDA|1|1|A|945
6WDA|1|1|C|946
*
6WDA|1|1|G|971
6WDA|1|1|A|972
6WDA|1|1|A|973
6WDA|1|1|G|974
6WDA|1|1|A|975
6WDA|1|1|G|976
*
6WDA|1|1|C|987
6WDA|1|1|A|988
6WDA|1|1|G|989
6WDA|1|1|A|990
6WDA|1|1|C|991
*
6WDA|1|1|G|1163
6WDA|1|1|C|1164
*
6WDA|1|1|G|1185
6WDA|1|1|G|1186
6WDA|1|1|G|1187
6WDA|1|1|U|1188
6WDA|1|1|A|1189
6WDA|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain z
50S ribosomal protein L30

Coloring options:

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