J7_6WDG_001

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6WDG|1|1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDG|1|1|C|8
6WDG|1|1|G|9
6WDG|1|1|A|10
6WDG|1|1|C|11
6WDG|1|1|U|12
6WDG|1|1|A|13
6WDG|1|1|A|14
6WDG|1|1|G|15
*
6WDG|1|1|U|525
6WDG|1|1|A|526
6WDG|1|1|C|527
6WDG|1|1|A|528
6WDG|1|1|A|529
6WDG|1|1|G|530
6WDG|1|1|C|531
*
6WDG|1|1|G|2018
6WDG|1|1|A|2019
6WDG|1|1|A|2020
6WDG|1|1|C|2021
6WDG|1|1|U|2022
6WDG|1|1|C|2023
*
6WDG|1|1|G|2040
6WDG|1|1|U|2041
6WDG|1|1|A|2042
6WDG|1|1|C|2043
*
6WDG|1|1|G|2625
6WDG|1|1|C|2626
6WDG|1|1|G|2627
6WDG|1|1|C|2628
6WDG|1|1|U|2629
6WDG|1|1|G|2630
*
6WDG|1|1|C|2788
6WDG|1|1|C|2789
*
6WDG|1|1|G|2894
6WDG|1|1|G|2895

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20

Chain s

50S ribosomal protein L22