3D structure

PDB id
6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6WDJ|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDJ|1|1|C|8
6WDJ|1|1|G|9
6WDJ|1|1|A|10
6WDJ|1|1|C|11
6WDJ|1|1|U|12
6WDJ|1|1|A|13
6WDJ|1|1|A|14
6WDJ|1|1|G|15
*
6WDJ|1|1|U|525
6WDJ|1|1|A|526
6WDJ|1|1|C|527
6WDJ|1|1|A|528
6WDJ|1|1|A|529
6WDJ|1|1|G|530
6WDJ|1|1|C|531
*
6WDJ|1|1|G|2018
6WDJ|1|1|A|2019
6WDJ|1|1|A|2020
6WDJ|1|1|C|2021
6WDJ|1|1|U|2022
6WDJ|1|1|C|2023
*
6WDJ|1|1|G|2040
6WDJ|1|1|U|2041
6WDJ|1|1|A|2042
6WDJ|1|1|C|2043
*
6WDJ|1|1|G|2625
6WDJ|1|1|C|2626
6WDJ|1|1|G|2627
6WDJ|1|1|C|2628
6WDJ|1|1|U|2629
6WDJ|1|1|G|2630
*
6WDJ|1|1|C|2788
6WDJ|1|1|C|2789
*
6WDJ|1|1|G|2894
6WDJ|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22

Coloring options:

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