J7_6WYV_001

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6WYV|1|I|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WYV|1|I|C|8
6WYV|1|I|G|9
6WYV|1|I|A|10
6WYV|1|I|C|11
6WYV|1|I|U|12
6WYV|1|I|A|13
6WYV|1|I|A|14
6WYV|1|I|G|15
*
6WYV|1|I|U|525
6WYV|1|I|A|526
6WYV|1|I|C|527
6WYV|1|I|A|528
6WYV|1|I|A|529
6WYV|1|I|G|530
6WYV|1|I|C|531
*
6WYV|1|I|G|2018
6WYV|1|I|A|2019
6WYV|1|I|A|2020
6WYV|1|I|C|2021
6WYV|1|I|U|2022
6WYV|1|I|C|2023
*
6WYV|1|I|G|2040
6WYV|1|I|U|2041
6WYV|1|I|A|2042
6WYV|1|I|C|2043
*
6WYV|1|I|G|2625
6WYV|1|I|C|2626
6WYV|1|I|G|2627
6WYV|1|I|C|2628
6WYV|1|I|U|2629
6WYV|1|I|G|2630
*
6WYV|1|I|C|2788
6WYV|1|I|C|2789
*
6WYV|1|I|G|2894
6WYV|1|I|G|2895

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13