J7_6WYV_002

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6WYV|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WYV|1|I|C|817
6WYV|1|I|G|818
6WYV|1|I|A|819
6WYV|1|I|A|820
6WYV|1|I|A|821
6WYV|1|I|G|822
*
6WYV|1|I|C|835
6WYV|1|I|G|836
6WYV|1|I|C|837
6WYV|1|I|C|838
*
6WYV|1|I|G|940
6WYV|1|I|A|941
6WYV|1|I|G|942
6WYV|1|I|A|943
6WYV|1|I|C|944
6WYV|1|I|A|945
6WYV|1|I|C|946
*
6WYV|1|I|G|971
6WYV|1|I|A|972
6WYV|1|I|A|973
6WYV|1|I|G|974
6WYV|1|I|A|975
6WYV|1|I|G|976
*
6WYV|1|I|C|987
6WYV|1|I|A|988
6WYV|1|I|G|989
6WYV|1|I|A|990
6WYV|1|I|C|991
*
6WYV|1|I|G|1163
6WYV|1|I|C|1164
*
6WYV|1|I|G|1185
6WYV|1|I|G|1186
6WYV|1|I|G|1187
6WYV|1|I|U|1188
6WYV|1|I|A|1189
6WYV|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15