3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6XDR|1|a|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XDR|1|a|C|8
6XDR|1|a|G|9
6XDR|1|a|A|10
6XDR|1|a|C|11
6XDR|1|a|U|12
6XDR|1|a|A|13
6XDR|1|a|A|14
6XDR|1|a|G|15
*
6XDR|1|a|U|525
6XDR|1|a|A|526
6XDR|1|a|C|527
6XDR|1|a|A|528
6XDR|1|a|A|529
6XDR|1|a|G|530
6XDR|1|a|C|531
*
6XDR|1|a|G|2018
6XDR|1|a|A|2019
6XDR|1|a|A|2020
6XDR|1|a|C|2021
6XDR|1|a|U|2022
6XDR|1|a|C|2023
*
6XDR|1|a|G|2040
6XDR|1|a|U|2041
6XDR|1|a|A|2042
6XDR|1|a|C|2043
*
6XDR|1|a|G|2625
6XDR|1|a|C|2626
6XDR|1|a|G|2627
6XDR|1|a|C|2628
6XDR|1|a|U|2629
6XDR|1|a|G|2630
*
6XDR|1|a|C|2788
6XDR|1|a|C|2789
*
6XDR|1|a|G|2894
6XDR|1|a|G|2895

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain i
50S ribosomal protein L32
Chain j
50S ribosomal protein L3
Chain s
50S ribosomal protein L13
Chain z
50S ribosomal protein L20

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2046 s