J7_6XGF_001

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6XGF|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XGF|1|a|C|8
6XGF|1|a|G|9
6XGF|1|a|A|10
6XGF|1|a|C|11
6XGF|1|a|U|12
6XGF|1|a|A|13
6XGF|1|a|A|14
6XGF|1|a|G|15
*
6XGF|1|a|U|525
6XGF|1|a|A|526
6XGF|1|a|C|527
6XGF|1|a|A|528
6XGF|1|a|A|529
6XGF|1|a|G|530
6XGF|1|a|C|531
*
6XGF|1|a|G|2018
6XGF|1|a|A|2019
6XGF|1|a|A|2020
6XGF|1|a|C|2021
6XGF|1|a|U|2022
6XGF|1|a|C|2023
*
6XGF|1|a|G|2040
6XGF|1|a|U|2041
6XGF|1|a|A|2042
6XGF|1|a|C|2043
*
6XGF|1|a|G|2625
6XGF|1|a|C|2626
6XGF|1|a|G|2627
6XGF|1|a|C|2628
6XGF|1|a|U|2629
6XGF|1|a|G|2630
*
6XGF|1|a|C|2788
6XGF|1|a|C|2789
*
6XGF|1|a|G|2894
6XGF|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20