J7_6XHY_002

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6XHY|1|1A|A|945, 6XHY|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHY|1|1A|C|817
6XHY|1|1A|G|818
6XHY|1|1A|A|819
6XHY|1|1A|A|820
6XHY|1|1A|A|821
6XHY|1|1A|U|822
*
6XHY|1|1A|A|835
6XHY|1|1A|G|836
*
6XHY|1|1A|U|943
6XHY|1|1A|G|944
6XHY|1|1A|A|945
6XHY|1|1A|G|946
*
6XHY|1|1A|C|971
6XHY|1|1A|G|972
6XHY|1|1A|A|973
6XHY|1|1A|G|974
6XHY|1|1A|C|975
6XHY|1|1A|G|975|||A
6XHY|1|1A|C|976
*
6XHY|1|1A|G|987
6XHY|1|1A|A|988
6XHY|1|1A|G|989
6XHY|1|1A|A|990
6XHY|1|1A|C|991
*
6XHY|1|1A|G|1163
6XHY|1|1A|G|1164
*
6XHY|1|1A|C|1185
6XHY|1|1A|G|1186
6XHY|1|1A|G|1187
6XHY|1|1A|U|1188
6XHY|1|1A|A|1189
6XHY|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21