J7_6XIJ_001

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6XIJ|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIJ|1|a|C|8
6XIJ|1|a|G|9
6XIJ|1|a|A|10
6XIJ|1|a|C|11
6XIJ|1|a|U|12
6XIJ|1|a|A|13
6XIJ|1|a|A|14
6XIJ|1|a|G|15
*
6XIJ|1|a|U|525
6XIJ|1|a|A|526
6XIJ|1|a|C|527
6XIJ|1|a|A|528
6XIJ|1|a|A|529
6XIJ|1|a|G|530
6XIJ|1|a|C|531
*
6XIJ|1|a|G|2018
6XIJ|1|a|A|2019
6XIJ|1|a|A|2020
6XIJ|1|a|C|2021
6XIJ|1|a|U|2022
6XIJ|1|a|C|2023
*
6XIJ|1|a|G|2040
6XIJ|1|a|U|2041
6XIJ|1|a|A|2042
6XIJ|1|a|C|2043
*
6XIJ|1|a|G|2625
6XIJ|1|a|C|2626
6XIJ|1|a|G|2627
6XIJ|1|a|C|2628
6XIJ|1|a|U|2629
6XIJ|1|a|G|2630
*
6XIJ|1|a|C|2788
6XIJ|1|a|C|2789
*
6XIJ|1|a|G|2894
6XIJ|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20