J7_6XZB_001

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6XZB|1|A2|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZB|1|A2|C|8
6XZB|1|A2|G|9
6XZB|1|A2|A|10
6XZB|1|A2|C|11
6XZB|1|A2|U|12
6XZB|1|A2|A|13
6XZB|1|A2|A|14
6XZB|1|A2|G|15
*
6XZB|1|A2|U|525
6XZB|1|A2|A|526
6XZB|1|A2|C|527
6XZB|1|A2|A|528
6XZB|1|A2|A|529
6XZB|1|A2|G|530
6XZB|1|A2|C|531
*
6XZB|1|A2|G|2018
6XZB|1|A2|A|2019
6XZB|1|A2|A|2020
6XZB|1|A2|C|2021
6XZB|1|A2|U|2022
6XZB|1|A2|C|2023
*
6XZB|1|A2|G|2040
6XZB|1|A2|U|2041
6XZB|1|A2|A|2042
6XZB|1|A2|C|2043
*
6XZB|1|A2|G|2625
6XZB|1|A2|C|2626
6XZB|1|A2|G|2627
6XZB|1|A2|C|2628
6XZB|1|A2|U|2629
6XZB|1|A2|G|2630
*
6XZB|1|A2|C|2788
6XZB|1|A2|C|2789
*
6XZB|1|A2|G|2894
6XZB|1|A2|G|2895

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L13

Chain Q2

50S ribosomal protein L20

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32