3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
6XZB|1|A2|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XZB|1|A2|C|817
6XZB|1|A2|G|818
6XZB|1|A2|A|819
6XZB|1|A2|A|820
6XZB|1|A2|A|821
6XZB|1|A2|G|822
*
6XZB|1|A2|C|835
6XZB|1|A2|G|836
6XZB|1|A2|C|837
6XZB|1|A2|C|838
*
6XZB|1|A2|G|940
6XZB|1|A2|A|941
6XZB|1|A2|G|942
6XZB|1|A2|A|943
6XZB|1|A2|C|944
6XZB|1|A2|A|945
6XZB|1|A2|C|946
*
6XZB|1|A2|G|971
6XZB|1|A2|A|972
6XZB|1|A2|A|973
6XZB|1|A2|G|974
6XZB|1|A2|A|975
6XZB|1|A2|G|976
*
6XZB|1|A2|C|987
6XZB|1|A2|A|988
6XZB|1|A2|G|989
6XZB|1|A2|A|990
6XZB|1|A2|C|991
*
6XZB|1|A2|G|1163
6XZB|1|A2|C|1164
*
6XZB|1|A2|G|1185
6XZB|1|A2|G|1186
6XZB|1|A2|G|1187
6XZB|1|A2|U|1188
6XZB|1|A2|A|1189
6XZB|1|A2|G|1190

Current chains

Chain A2
23S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain L2
50S ribosomal protein L15
Chain Q2
50S ribosomal protein L20
Chain R2
50S ribosomal protein L21
Chain Z2
50S ribosomal protein L30
Chain d2
50S ribosomal protein L35

Coloring options:

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